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General:     Quickstart FAQs Terms of Use Interpretation Protocols Flowchart Formal Name Encoding Formal Neuron Type Definitions Legacy v1 website Feedback:     User Feedback Form Feedback Submissions ABA Counts Database:     ReadMe - ABA Counts Database.docx ReadMe - ABA Counts Database.txt Masked_Segmentations.zip Output_Files.zip Scripts.zip Stereoinvestigator_Files.zip Morphology:     Abbreviations Bibliographic Protocols Interpretations (Brief) Interpretations (Full) Molecular markers:     Abbreviations High-conf-genes_CA1-SP High-conf-genes_CA2-SP High-conf-genes_CA3-SP High-conf-genes_DG-SG Allen Brain Atlas gene expression confidence by parcel Gene Expression Analyzer Relational Expression Inferences (REIs) Electrophysiology:     Abbreviations and Definitions Firing Patterns:     Abbreviations and Definitions Principles of Classification of Firing Pattern Elements Firing Pattern Identification Pseudocode Simulation of Firing Patterns:     Model Definition Model Fitting Model Simulation Using CARLsim NeuroML2 files Connectivity:     Definitions and Protocols Netlist Java Connectivity Map Won't Launch Synaptome:     Requirements, Installation, and Advanced Access Instructions Search:     Advanced Search Engine User Manual Hi-resolution images:     Morphology Matrix Marker Matrix Electrophysiology Table Principles of Classification of Firing Pattern Elements Table Connectivity Matrix Dentate Gyrus Circuit Diagram Dentate Gyrus Circuit Diagram (source) Synapse Probabilities:     Bio-protocol sample files Miscellaneous:     Known Bugs and Issues Future Updates Ongoing Literature Mining Release Notes On-hold Types Supplemental Evidence Usage Scenario Hippocampome Video Overview Bibliography Hippocampome.org Usage Citations Hippocampome.org GitHub code repository Other Useful Links Acknowledgements